PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000245436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 394aa    MW: 43369.1 Da    PI: 8.7871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000245436genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
    MDP0000245436 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding41.53.2e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
    MDP0000245436  69 GEFSDEEDRIICNLFTNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.518962IPR017930Myb domain
SuperFamilySSF466891.76E-2711109IPR009057Homeodomain-like
SMARTSM007175.5E-131364IPR001005SANT/Myb domain
PfamPF002491.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-251569IPR009057Homeodomain-like
CDDcd001673.36E-91662No hitNo description
PROSITE profilePS5129421.87463117IPR017930Myb domain
SMARTSM007172.2E-1167115IPR001005SANT/Myb domain
PfamPF002496.9E-1169111IPR001005SANT/Myb domain
CDDcd001672.07E-770113No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC NLFTNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGI  120
SILPSQLLKS HPSLLLQTSS TSSSPLSYRG SNTSTTFYTQ TRSFTGTLEP ISFSQSLMSS  180
SSINSAPSAL QIPQESFVGR HMQQQHYQVK DNILMFGGEA SCSSSDGSCS NHQITEREYE  240
YGGAYGGRNG GATNGEVKLQ MGLQNYNFFN GVGREQKIMQ NNSSGNRMWE DQAGLDYGLE  300
EIKQLISSTG KVMVVXVEVL TTEWVATMMA IAVVVVDIXE VVRVLAVAMV VGQVVEVVKM  360
TIVAMAVVVR VLVVALVVVL GHGGTATMYD PTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369560.10.0PREDICTED: transcription factor RAX2
TrEMBLM5VQA21e-139M5VQA2_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s12530.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-77myb domain protein 36